Index

A

a (Stretch attribute), [1] active_models (AllChainsWrap attribute), [1] adjust (Colored attribute) AllChains (class in jexplore.steps.mh) AllChainsWrap (class in jexplore.steps.modsel) (class in jexplore.steps.modsel.inmodel_single)

allmodsll (SamplingMS attribute), [1] allmodslp (SamplingMS attribute), [1] allmodspp (SamplingMS attribute), [1] ArrayFn (class in jexplore.sampling.state) auto_correlation_length() (in module jexplore.tools.diagnostic)

B

backend (JaxSampler attribute) BadColoring beta (MHStep attribute) bounds (Box attribute), [1] Box (class in jexplore.sampling) (class in jexplore.sampling.space) build() (AllChains method) (AllChainsWrap method), [1] (Colored method) (DEStep method), [1] (Direct method) (DrawModel method), [1] (DrawPseudo method), [1] (IMDEStep method), [1] (IMStretch method), [1] (InModelSC method) (MHStep method) (MVRandomWalk method) (Step method)

builder() (Step method) burn (DefaultBackend attribute), [1]

C

cd_const (MVRandomWalk attribute) cgroups (Colored attribute) clean() (DefaultBackend method), [1] cmasks (SamplingMS attribute), [1] Colored (class in jexplore.steps.colored) colored_step() (Colored method) (ColoredSC method) (TSwap method), [1] ColoredAlt (class in jexplore.steps.colored_alt) ColoredMH (class in jexplore.steps.colored)

ColoredSC (class in jexplore.steps.colored) complete() (Epoch method), [1] (EpochMH method), [1] compute() (MHStep method) (State method), [1] compute_cov() (in module jexplore.tools.covariance) counts (EpochStats attribute), [1] cov (MVNormal attribute) covs (Epoch attribute), [1] cycle (Epoch attribute), [1]

D

DefaultBackend (class in jexplore.backends) (class in jexplore.backends.default) DEFAULTBKND_CONFIG (in module jexplore.backends.default) DEStep (class in jexplore.steps) (class in jexplore.steps.de) DEStepAlt (class in jexplore.steps.colored_alt) dim (Box attribute), [1] (Distr attribute) (Sampling attribute), [1] (Space attribute) Direct (class in jexplore.steps.direct)

dist (Direct attribute) Distr (class in jexplore.tools.distributions) draw_cov() (MVNormal static method) draw_funcs (DrawPseudo attribute), [1] draw_pseudo (DrawModel attribute), [1] DrawFn (in module jexplore.tools.distributions) DrawModel (class in jexplore.steps.modsel) (class in jexplore.steps.modsel.model_switch) DrawPseudo (class in jexplore.steps.modsel) (class in jexplore.steps.modsel.model_switch) duplicate (Colored attribute)

E

Epoch (class in jexplore.sampling) (class in jexplore.sampling.epoch) epoch (Step attribute) epoch_cycle() (Steps method) epoch_dist (Direct attribute) EpochCycle (class in jexplore.sampling) (class in jexplore.sampling.epoch)

EpochMH (class in jexplore.sampling) (class in jexplore.sampling.mh) EpochMS (class in jexplore.sampling) (class in jexplore.sampling.modsel) EpochStats (class in jexplore.sampling) (class in jexplore.sampling.epoch) eval() (Distr method) (Uniform method)

F

flatten_samples() (DefaultBackend static method), [1] from_dict() (State class method), [1]

from_run() (Epoch method), [1] (EpochStats static method), [1]

G

gamma (DEStep attribute), [1] Gaussian (class in jexplore.steps) (class in jexplore.steps.direct) GaussianRandomWalk (class in jexplore.steps) (class in jexplore.steps.rwalk) gelman_rubin_statistic() (in module jexplore.tools.diagnostic) get() (DefaultBackend method), [1] get_accepted() (Step static method) get_epoch() (SamplingMH method), [1] get_in_batch() (State method), [1] get_masks() (SamplingMS static method), [1] get_partners (DEStepAlt attribute) (IMDEStep attribute), [1] (IMStretch attribute), [1] (StretchAlt attribute)

get_partners() (ColoredAlt method) (ColoredSC method) (IMColoredSC method) get_sampler() (SamplingMH method), [1] get_samples() (DefaultBackend method), [1] get_stats() (DefaultBackend method), [1] grouping() (Colored method) (ColoredMH method) (ColoredSC method) (TSwap method), [1] groups (Colored attribute)

I

icov (MVNormal attribute) IMColoredSC (class in jexplore.steps.modsel.inmodel_colored) IMDEStep (class in jexplore.steps.modsel) (class in jexplore.steps.modsel.inmodel_colored) IMStretch (class in jexplore.steps.modsel) (class in jexplore.steps.modsel.inmodel_colored) inbox() (Uniform method)

ingest() (DefaultBackend method), [1] ingest_dict() (DefaultBackend method), [1] InModelSC (class in jexplore.steps.modsel.inmodel_single) inpars (SamplingMH attribute), [1] inspace() (Box method), [1] (Space method) isteps (EpochCycle attribute), [1]

J

JaxSampler (class in jexplore.sampler) jexplore module jexplore.backends module jexplore.backends.default module jexplore.sampler module jexplore.sampling module jexplore.sampling.base module jexplore.sampling.epoch module jexplore.sampling.mh module jexplore.sampling.modsel module jexplore.sampling.space module jexplore.sampling.state module jexplore.steps module jexplore.steps.colored module jexplore.steps.colored_alt module jexplore.steps.de module

jexplore.steps.direct module jexplore.steps.mh module jexplore.steps.modsel module jexplore.steps.modsel.inmodel_colored module jexplore.steps.modsel.inmodel_single module jexplore.steps.modsel.model_switch module jexplore.steps.modsel.swap module jexplore.steps.rwalk module jexplore.steps.single_masked module jexplore.steps.step module jexplore.steps.stretch module jexplore.steps.tswap module jexplore.tools module jexplore.tools.covariance module jexplore.tools.diagnostic module jexplore.tools.distributions module

K

k (StateMS attribute), [1]

L

ldist_from_list() (SamplingMS static method), [1] leval() (Distr method) (MVNormal method) (Normal method) (StudentT method) (Uniform method) ll (StateMH attribute), [1] lnorm (MVNormal attribute) (Normal attribute)

load() (DefaultBackend method), [1] load_epoch() (DefaultBackend static method), [1] logger (in module jexplore.backends.default) (in module jexplore.sampler) loglik (SamplingMH attribute), [1] logprior (SamplingMH attribute), [1] lower (MVNormal attribute) (MVRandomWalk attribute) lp (StateMH attribute), [1] lvol (Uniform attribute)

M

mask (AllChains attribute) masked_covs (AllChains attribute) masks (SamplingMS attribute), [1] maxval (Uniform attribute) mdims (IMStretch attribute), [1] mh() (MHStep method) MHStep (class in jexplore.steps.mh) minval (Uniform attribute) mod_update (SamplingMS attribute), [1] module jexplore jexplore.backends jexplore.backends.default jexplore.sampler jexplore.sampling jexplore.sampling.base jexplore.sampling.epoch jexplore.sampling.mh jexplore.sampling.modsel jexplore.sampling.space jexplore.sampling.state jexplore.steps jexplore.steps.colored jexplore.steps.colored_alt jexplore.steps.de jexplore.steps.direct jexplore.steps.mh jexplore.steps.modsel jexplore.steps.modsel.inmodel_colored jexplore.steps.modsel.inmodel_single jexplore.steps.modsel.model_switch jexplore.steps.modsel.swap jexplore.steps.rwalk jexplore.steps.single_masked jexplore.steps.step jexplore.steps.stretch jexplore.steps.tswap jexplore.tools jexplore.tools.covariance jexplore.tools.diagnostic jexplore.tools.distributions

MVNormal (class in jexplore.tools.distributions) MVRandomWalk (class in jexplore.steps.rwalk)

N

n (EpochCycle attribute), [1] nchain (Sampling attribute), [1] ngroups (Colored attribute) nmodels (SamplingMS attribute), [1] Normal (class in jexplore.tools.distributions)

normal (StudentT attribute) npart (ColoredSC attribute) (DEStep attribute), [1] (Stretch attribute), [1] nu (StudentT attribute) nwalker (SamplingMH attribute), [1]

O

opts (Direct attribute)

OrderByModel (class in jexplore.steps.modsel) (class in jexplore.steps.modsel.swap)

P

p (State attribute), [1] permute (Colored attribute) permuting() (Colored method) (ColoredMH method) ppdraw (SamplingMS attribute), [1] ppleval (SamplingMS attribute), [1] proposal() (AllChains method) (AllChainsWrap method), [1] (ColoredAlt method) (ColoredSC method) (DEStep method), [1] (Direct method) (IMColoredSC method) (InModelSC method) (MVRandomWalk method) (SingleMasked method) (Stretch method), [1]

R

read_epoch() (DefaultBackend class method), [1] reorder (DrawModel attribute), [1] reset() (DefaultBackend method), [1]

run() (JaxSampler method) run_epoch() (JaxSampler static method) run_step() (Epoch method), [1] runtime_grouping() (Colored method)

S

sa (Stretch attribute), [1] sample() (Distr method) (MVNormal method) (Normal method) (StudentT method) (Uniform method) sample_gamma() (DEStep method), [1] (IMDEStep method), [1] sample_z() (Stretch method), [1] samples (Epoch attribute), [1] Sampling (class in jexplore.sampling) (class in jexplore.sampling.base) sampling (Epoch attribute), [1] (JaxSampler attribute) (Step attribute) SamplingMH (class in jexplore.sampling) (class in jexplore.sampling.mh) SamplingMS (class in jexplore.sampling) (class in jexplore.sampling.modsel) sc_masked_proposal() (SingleMasked method) scalar (MVNormal attribute) scale (MVRandomWalk attribute) set_burn() (DefaultBackend method), [1] set_cycle() (Epoch method), [1] set_val() (State method), [1] sigma (DEStep attribute), [1] sigmas (IMDEStep attribute), [1] SingleMasked (class in jexplore.steps.single_masked) slice() (State method), [1] Space (class in jexplore.sampling.space) space (Sampling attribute), [1] State (class in jexplore.sampling) (class in jexplore.sampling.state)

statecls (Epoch attribute), [1] (EpochMH attribute), [1] (EpochMS attribute), [1] StateMH (class in jexplore.sampling) (class in jexplore.sampling.mh) StateMS (class in jexplore.sampling) (class in jexplore.sampling.modsel) stats (Epoch attribute), [1] (EpochStats attribute), [1] Step (class in jexplore.steps.step) step() (AllChains method) (Colored method) (DrawModel method), [1] (DrawPseudo method), [1] (MHStep method) (OrderByModel method), [1] (Step method) StepBuilder (in module jexplore.sampler) Steps (class in jexplore.sampler) steps (EpochCycle attribute), [1] (EpochStats attribute), [1] (InModelSC attribute) (JaxSampler attribute) StepSample (class in jexplore.sampling) (class in jexplore.sampling.epoch) stepsargs (InModelSC attribute) Stretch (class in jexplore.steps) (class in jexplore.steps.stretch) StretchAlt (class in jexplore.steps.colored_alt) StudentT (class in jexplore.tools.distributions) StudentTRandomWalk (class in jexplore.steps) (class in jexplore.steps.rwalk) swap() (State method), [1]

T

Tbackend (in module jexplore.sampler) temps (SamplingMH attribute), [1] Tepoch (in module jexplore.sampler) to_backend() (Epoch method), [1] (EpochCycle method), [1] (EpochStats method), [1] (Sampling method), [1] (SamplingMH method), [1] (SamplingMS method), [1]

Tsampling (in module jexplore.sampler) Tstate (in module jexplore.sampler) TSwap (class in jexplore.steps) (class in jexplore.steps.tswap) TSwapMS (in module jexplore.steps.modsel) (in module jexplore.steps.modsel.swap)

U

Uniform (class in jexplore.steps) (class in jexplore.steps.direct) (class in jexplore.tools.distributions)

update() (DefaultBackend method), [1] (State method), [1] update_mask() (State method), [1] update_slice() (State method), [1]

V

vmod_update (SamplingMS attribute), [1]

W

weights (EpochCycle attribute), [1] wrap() (Box method), [1] (Space method)

wrap_dims (Box attribute), [1] wrap_domain (Box attribute), [1] wrapped_step (AllChainsWrap attribute), [1]